SequenceVariant

open class SequenceVariant: BackboneElement

Variant in sequence.

The definition of variant here originates from Sequence ontology (variant_of). This element can represent amino acid or nucleic sequence change(including insertion,deletion,SNP,etc.) It can represent some complex mutation or segment variation with the assist of CIGAR string.

  • Variant in sequence.

    The definition of variant here originates from Sequence ontology (variant_of). This element can represent amino acid or nucleic sequence change(including insertion,deletion,SNP,etc.) It can represent some complex mutation or segment variation with the assist of CIGAR string.

    Declaration

    Swift

    override open class var resourceType: String

  • Extended CIGAR string for aligning the sequence with reference bases.

    Declaration

    Swift

    public var cigar: FHIRString?
  • end

    End position of the variant on the reference sequence.

    Declaration

    Swift

    public var end: FHIRInteger?

  • Allele that was observed.

    Declaration

    Swift

    public var observedAllele: FHIRString?

  • Allele in the reference sequence.

    Declaration

    Swift

    public var referenceAllele: FHIRString?

  • Start position of the variant on the reference sequence.

    Declaration

    Swift

    public var start: FHIRInteger?

  • Pointer to observed variant information.

    Declaration

    Swift

    public var variantPointer: Reference?

  • Pointer to observed variant information.

    Declaration

    Swift

    override open func populate(from json: FHIRJSON, context instCtx: inout FHIRInstantiationContext)

    Parameters

    json

    The JSON element to use to populate the receiver
    context

    The instantiation context to use

  • Undocumented

    Declaration

    Swift

    open class SequenceVariant: BackboneElement