Sequence

open class Sequence: DomainResource

Information about a biological sequence.

Raw data describing a biological sequence.

  • Information about a biological sequence.

    Raw data describing a biological sequence.

    Declaration

    Swift

    override open class var resourceType: String

  • Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end).

    Declaration

    Swift

    public var coordinateSystem: FHIRInteger?

  • The method for sequencing.

    Declaration

    Swift

    public var device: Reference?

  • Unique ID for this particular sequence. This is a FHIR-defined id.

    Declaration

    Swift

    public var identifier: [Identifier]?

  • Sequence that was observed.

    Declaration

    Swift

    public var observedSeq: FHIRString?

  • Who and/or what this is about.

    Declaration

    Swift

    public var patient: Reference?

  • Who should be responsible for test result.

    Declaration

    Swift

    public var performer: Reference?

  • Pointer to next atomic sequence.

    Declaration

    Swift

    public var pointer: [Reference]?

  • An set of value as quality of sequence.

    Declaration

    Swift

    public var quality: [SequenceQuality]?

  • The number of copies of the seqeunce of interest. (RNASeq).

    Declaration

    Swift

    public var quantity: Quantity?

  • Average number of reads representing a given nucleotide in the reconstructed sequence.

    Declaration

    Swift

    public var readCoverage: FHIRInteger?

  • A sequence used as reference.

    Declaration

    Swift

    public var referenceSeq: SequenceReferenceSeq?

  • External repository which contains detailed report related with observedSeq in this resource.

    Declaration

    Swift

    public var repository: [SequenceRepository]?

  • Specimen used for sequencing.

    Declaration

    Swift

    public var specimen: Reference?

  • aa | dna | rna.

    Declaration

    Swift

    public var type: FHIRString?

  • Variant in sequence.

    Declaration

    Swift

    public var variant: [SequenceVariant]?

  • Convenience initializer, taking all required properties as arguments.

    Declaration

    Swift

    public convenience init(coordinateSystem: FHIRInteger)

  • Convenience initializer, taking all required properties as arguments.

    Declaration

    Swift

    override open func populate(from json: FHIRJSON, context instCtx: inout FHIRInstantiationContext)

  • Undocumented

    Declaration

    Swift

    open class Sequence: DomainResource