SequenceQuality

open class SequenceQuality: BackboneElement

An set of value as quality of sequence.

An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score (SO:0001686).

  • An set of value as quality of sequence.

    An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score (SO:0001686).

    Declaration

    Swift

    override open class var resourceType: String
  • end

    End position of the sequence.

    Declaration

    Swift

    public var end: FHIRInteger?

  • F-score.

    Declaration

    Swift

    public var fScore: FHIRDecimal?

  • False positives where the non-REF alleles in the Truth and Query Call Sets match.

    Declaration

    Swift

    public var gtFP: FHIRDecimal?

  • Method to get quality.

    Declaration

    Swift

    public var method: CodeableConcept?

  • Precision of comparison.

    Declaration

    Swift

    public var precision: FHIRDecimal?

  • False positives.

    Declaration

    Swift

    public var queryFP: FHIRDecimal?

  • True positives from the perspective of the query data.

    Declaration

    Swift

    public var queryTP: FHIRDecimal?

  • Recall of comparison.

    Declaration

    Swift

    public var recall: FHIRDecimal?

  • Quality score for the comparison.

    Declaration

    Swift

    public var score: Quantity?

  • Standard sequence for comparison.

    Declaration

    Swift

    public var standardSequence: CodeableConcept?

  • Start position of the sequence.

    Declaration

    Swift

    public var start: FHIRInteger?

  • False negatives.

    Declaration

    Swift

    public var truthFN: FHIRDecimal?

  • True positives from the perspective of the truth data.

    Declaration

    Swift

    public var truthTP: FHIRDecimal?

  • INDEL / SNP / Undefined variant.

    Declaration

    Swift

    public var type: QualityType?

  • Convenience initializer, taking all required properties as arguments.

    Declaration

    Swift

    public convenience init(type: QualityType)

  • Convenience initializer, taking all required properties as arguments.

    Declaration

    Swift

    override open func populate(from json: FHIRJSON, context instCtx: inout FHIRInstantiationContext)

    Parameters

    json

    The JSON element to use to populate the receiver
    context

    The instantiation context to use

  • Undocumented

    Declaration

    Swift

    open class SequenceQuality: BackboneElement