fhirclient.models.molecularsequence.MolecularSequenceVariant Class Reference

Variant in sequence. More...

Inheritance diagram for fhirclient.models.molecularsequence.MolecularSequenceVariant:

Public Member Functions
	__init__ (self, jsondict=None, strict=True)
	Initialize all valid properties.
	elementProperties (self)
	Returns a list of tuples, one tuple for each property that should be serialized, as: ("name", "json_name", type, is_list, "of_many", not_optional)
Public Member Functions inherited from fhirclient.models.fhirabstractbase.FHIRAbstractBase
	with_json (cls, jsonobj)
	Initialize an element from a JSON dictionary or array.
	with_json_and_owner (cls, jsonobj, owner)
	Instantiates by forwarding to with_json(), then remembers the "owner" of the instantiated elements.
	update_with_json (self, jsondict)
	Update the receiver with data in a JSON dictionary.
	as_json (self)
	Serializes to JSON by inspecting elementProperties() and creating a JSON dictionary of all registered properties.
	owningResource (self)
	Walks the owner hierarchy and returns the next parent that is a DomainResource instance.
	owningBundle (self)
	Walks the owner hierarchy and returns the next parent that is a Bundle instance.
	resolvedReference (self, refid)
	Returns the resolved reference with the given id, if it has been resolved already.
	didResolveReference (self, refid, resolved)
	Called by FHIRResource when it resolves a reference.

Public Attributes
	cigar
	end
	observedAllele
	referenceAllele
	start
	variantPointer
Public Attributes inherited from fhirclient.models.backboneelement.BackboneElement
	modifierExtension
Public Attributes inherited from fhirclient.models.element.Element
	extension
	id

Static Public Attributes
str	resource_type = "MolecularSequenceVariant"
Static Public Attributes inherited from fhirclient.models.backboneelement.BackboneElement
str	resource_type = "BackboneElement"
Static Public Attributes inherited from fhirclient.models.element.Element
str	resource_type = "Element"

Additional Inherited Members
Protected Member Functions inherited from fhirclient.models.fhirabstractbase.FHIRAbstractBase
	_with_json_dict (cls, jsondict)
	Internal method to instantiate from JSON dictionary.
	_matches_type (self, value, typ)
Protected Attributes inherited from fhirclient.models.fhirabstractbase.FHIRAbstractBase
	_resolved
	_owner

Detailed Description

Variant in sequence.

The definition of variant here originates from Sequence ontology (variant_ of). This element can represent amino acid or nucleic sequence change(including insertion,deletion,SNP,etc.) It can represent some complex mutation or segment variation with the assist of CIGAR string.

Constructor & Destructor Documentation

__init__()

fhirclient.models.molecularsequence.MolecularSequenceVariant.__init__	(		self,
			jsondict = None,
			strict = True
	)

Initialize all valid properties.

   :raises: FHIRValidationError on validation errors, unless strict is False

Parameters

jsondict	dict A JSON dictionary to use for initialization
strict	bool If True (the default), invalid variables will raise a TypeError

Reimplemented from fhirclient.models.backboneelement.BackboneElement.

Member Function Documentation

elementProperties()

fhirclient.models.molecularsequence.MolecularSequenceVariant.elementProperties

(

self

)

Returns a list of tuples, one tuple for each property that should be serialized, as: ("name", "json_name", type, is_list, "of_many", not_optional)

Reimplemented from fhirclient.models.backboneelement.BackboneElement.

Member Data Documentation

cigar

fhirclient.models.molecularsequence.MolecularSequenceVariant.cigar

end

fhirclient.models.molecularsequence.MolecularSequenceVariant.end

observedAllele

fhirclient.models.molecularsequence.MolecularSequenceVariant.observedAllele

referenceAllele

fhirclient.models.molecularsequence.MolecularSequenceVariant.referenceAllele

resource_type

str fhirclient.models.molecularsequence.MolecularSequenceVariant.resource_type = "MolecularSequenceVariant"

static

start

fhirclient.models.molecularsequence.MolecularSequenceVariant.start

variantPointer

fhirclient.models.molecularsequence.MolecularSequenceVariant.variantPointer

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The documentation for this class was generated from the following file:

• fhirclient/models/molecularsequence.py