SMART on FHIR Python Client 4.2.0
 
Loading...
Searching...
No Matches
fhirclient.models.molecularsequence.MolecularSequenceVariant Class Reference

Variant in sequence. More...

Inheritance diagram for fhirclient.models.molecularsequence.MolecularSequenceVariant:
fhirclient.models.backboneelement.BackboneElement fhirclient.models.element.Element fhirclient.models.fhirabstractbase.FHIRAbstractBase

Public Member Functions

 __init__ (self, jsondict=None, strict=True)
 Initialize all valid properties.
 
 elementProperties (self)
 Returns a list of tuples, one tuple for each property that should be serialized, as: ("name", "json_name", type, is_list, "of_many", not_optional)
 
- Public Member Functions inherited from fhirclient.models.fhirabstractbase.FHIRAbstractBase
 with_json (cls, jsonobj)
 Initialize an element from a JSON dictionary or array.
 
 with_json_and_owner (cls, jsonobj, owner)
 Instantiates by forwarding to with_json(), then remembers the "owner" of the instantiated elements.
 
 update_with_json (self, jsondict)
 Update the receiver with data in a JSON dictionary.
 
 as_json (self)
 Serializes to JSON by inspecting elementProperties() and creating a JSON dictionary of all registered properties.
 
 owningResource (self)
 Walks the owner hierarchy and returns the next parent that is a DomainResource instance.
 
 owningBundle (self)
 Walks the owner hierarchy and returns the next parent that is a Bundle instance.
 
 resolvedReference (self, refid)
 Returns the resolved reference with the given id, if it has been resolved already.
 
 didResolveReference (self, refid, resolved)
 Called by FHIRResource when it resolves a reference.
 

Public Attributes

 cigar
 
 end
 
 observedAllele
 
 referenceAllele
 
 start
 
 variantPointer
 
- Public Attributes inherited from fhirclient.models.backboneelement.BackboneElement
 modifierExtension
 
- Public Attributes inherited from fhirclient.models.element.Element
 extension
 
 id
 

Static Public Attributes

str resource_type = "MolecularSequenceVariant"
 
- Static Public Attributes inherited from fhirclient.models.backboneelement.BackboneElement
str resource_type = "BackboneElement"
 
- Static Public Attributes inherited from fhirclient.models.element.Element
str resource_type = "Element"
 

Additional Inherited Members

- Protected Member Functions inherited from fhirclient.models.fhirabstractbase.FHIRAbstractBase
 _with_json_dict (cls, jsondict)
 Internal method to instantiate from JSON dictionary.
 
 _matches_type (self, value, typ)
 
- Protected Attributes inherited from fhirclient.models.fhirabstractbase.FHIRAbstractBase
 _resolved
 
 _owner
 

Detailed Description

Variant in sequence.

The definition of variant here originates from Sequence ontology (variant_ of). This element can represent amino acid or nucleic sequence change(including insertion,deletion,SNP,etc.) It can represent some complex mutation or segment variation with the assist of CIGAR string.

Constructor & Destructor Documentation

◆ __init__()

fhirclient.models.molecularsequence.MolecularSequenceVariant.__init__ (   self,
  jsondict = None,
  strict = True 
)

Initialize all valid properties.

   :raises: FHIRValidationError on validation errors, unless strict is False
Parameters
jsondictdict A JSON dictionary to use for initialization
strictbool If True (the default), invalid variables will raise a TypeError

Reimplemented from fhirclient.models.backboneelement.BackboneElement.

Member Function Documentation

◆ elementProperties()

fhirclient.models.molecularsequence.MolecularSequenceVariant.elementProperties (   self)

Returns a list of tuples, one tuple for each property that should be serialized, as: ("name", "json_name", type, is_list, "of_many", not_optional)

Reimplemented from fhirclient.models.backboneelement.BackboneElement.

Member Data Documentation

◆ cigar

fhirclient.models.molecularsequence.MolecularSequenceVariant.cigar

◆ end

fhirclient.models.molecularsequence.MolecularSequenceVariant.end

◆ observedAllele

fhirclient.models.molecularsequence.MolecularSequenceVariant.observedAllele

◆ referenceAllele

fhirclient.models.molecularsequence.MolecularSequenceVariant.referenceAllele

◆ resource_type

str fhirclient.models.molecularsequence.MolecularSequenceVariant.resource_type = "MolecularSequenceVariant"
static

◆ start

fhirclient.models.molecularsequence.MolecularSequenceVariant.start

◆ variantPointer

fhirclient.models.molecularsequence.MolecularSequenceVariant.variantPointer

The documentation for this class was generated from the following file: